FreeSurfer is a software package to analyze MRI scans of human brains. The OSG Connect service used to support a tool called Fsurf, which has been discontinued for security reasons. Today, we support the official FreeSurfer container image and workflow. Please see:
- https://github.com/pegasus-isi/freesurfer-osg-workflow - scroll down to see the documentation on this page.
- Container image:
/cvmfs/singularity.opensciencegrid.org/opensciencegrid/osgvo-freesurfer:latestand defined at https://github.com/opensciencegrid/osgvo-freesurfer
To use the FreeSurfer Pegasus workflow on the OSPool, you need:
- Your own FreeSurfer license file (see: https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall#License)
- A regular OSG Connect account.
Privacy and Confidentiality of Subjects
In order to protect the privacy of your participants’ scans, users should only run only defaced and fully deidentified scans for processing. The OSG Connect service has no support for HIPPA or other 'private' data requirements.
This page was updated on Sep 15, 2022 at 15:41 from examples/FreeSurfer/Introduction.md.