Using FreeSurfer on OSG

What's New in Fsurf 2.0
Overview This document describes the new features in Fsurf 2.0 and the differences from the 1.x versions. What's New Fsurf 2.0 adds a few new fe...
Wed, 19 Dec, 2018 at 8:00 AM
Introduction to Fsurf and FreeSurfer
Overview FreeSurfer is a software package to analyze MRI scans of human brains. The Open Science Grid (OSG) has developed a command line utility, Fsurf, t...
Wed, 19 Dec, 2018 at 8:01 AM
Setting up Fsurf on Your Computer
Requesting an Account To use Fsurf from your computer, you will first need to request an account by submitting a ticket request. In the subject field of t...
Wed, 19 Dec, 2018 at 8:01 AM
Using Fsurf
Overview Get a Sample MRI file Performing a Standard Image Reconstruction Combining Multiple Scans of a Subject For a Single Reconstruction Runn...
Wed, 19 Dec, 2018 at 8:01 AM
Processing Multiple Subjects Using Fsurf
Overview Preparing to submit scans Running fsurf non-interactively Scripting fsurf submissions Generating the text file Submission script ...
Wed, 19 Dec, 2018 at 8:01 AM
Anonymizing Scans
In order to protect the privacy of your participants’ scans, we request that you submit only defaced and fully deidentified scans for processing by fsurf. S...
Wed, 19 Dec, 2018 at 8:00 AM
Saving or Changing User Account Information
Saving account name and password When you run fsurf it will ask you for an username and password. After requesting this information, fsurf will ask you i...
Wed, 19 Dec, 2018 at 8:01 AM
FreeSurfer Validation on the OSG
Overview This document outlines the validation of the FreeSurfer worksflows on OSG. All validation has been done using FreeSurfer 5.3. Testing on Scien...
Wed, 19 Dec, 2018 at 8:01 AM
Fsurf Command Reference
Overview Command and Option summary Submit Options List Options Status Options Output Options Remove Options Retry Options Change-passwo...
Wed, 19 Dec, 2018 at 8:00 AM